PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HWR4Z
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 554aa    MW: 61700.1 Da    PI: 8.394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HWR4ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12388434455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I++Lq
  Araip.HWR4Z 388 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHINELQ 434
                  799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-2535161IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.0E-8163201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.672384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-18387450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-14387438No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17388450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9388434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-16390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MVMKILGKRA FDYLASNSFI TNESMLMATG SFENLQNKLS DLVERPNLNH FSWNYAIFWQ  60
FSQSKFKKDC VVLGWGDGCC REPIEGEEER EALRLGFDDD EVVQRMRKRV LQKLHTIFNG  120
SEEENENYAF GLDRVTDTEM FFLASMYFSF PKGYGGPGKC FELAGIKTVV LVPTELGVVE  180
LGSVRIVDEN LDLLKAVYSV FSSSFAHSSS FNDVGVPVPK IFGKELNVGN LNSGGKNFRE  240
KVVVRKIEEK KSWNGYPNGN NGIRFPNNAR NGVNGSSWAV NQGLSQGCLG GVFPPIPRSC  300
LSNMAKQADC GGKKDSLLEK FQRPPQGQVP MQIDFGVGSQ SFGRSIVGEC EISNSDSLHK  360
EEKPSATQEK RPKKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA  420
SLLGDAIAHI NELQAKLKAL EYEKSTLKST SKANLSGIEA NLRDRTCSFK VDIEADQDGV  480
IVKVSCPIEL HPTSKLIQAL KDSEMSILES TFNATNDHVF HTFVIKSHAS EQLTKEKVIA  540
AISGESNSRK LIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-21332017192Transcription factor MYC3
4rqw_B7e-21332017192Transcription factor MYC3
4rs9_A7e-21332017192Transcription factor MYC3
4yz6_A7e-21332017192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369377KRPKKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181554.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLA0A072TP530.0A0A072TP53_MEDTR; ABA-inducible bHLH-type transcription factor
STRINGGLYMA19G44570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-124bHLH family protein